I think I know what U want to get, as I want it too, but still not have a time to test it. Ok, so try this:
U have 12 panoramas, so open your project, go to Tourificator and set pano_01 as initial - then save project as e.g. project_01 and flashificate (by this U will have folder project_01 in My_panoramas folder ... with standard index.html and project_01.xml in \files\xml\ folder)
then, change initial pano to pano_02 and do the same steps = SAVE AS project_02, flashificate....
then pano_03 .... till pano_12
Thus U will have 12 project folders in C:\Users\%username%\Documents\My Panoramas - project_01 .... project_02 .... project_12. Now, what is the difference between them? Only index.html and project_01.xml, project_02.xml... etc. SO now, just rename each of index.html to index01.html, index02.html etc (use the same number as the folder number). Finally, copy all folders to one (yes, overwrite - as everything in all project folders is the same besides index.html and project_xy.xml). NOw U should have one project folder with 12 index(xy).html files and 12 xml files in \files\xml\. Each index.html should open different panorama (as it opens different xml). Try this and let me know
(after everything woks U can (if U want) delete FFC projects 02 ...12.ffc - U do not need them more)